Detailed information of SNP:
|
SNP ID:
sf1222844138(Gbrowse)
Chromosome: chr12 Position: 22844138 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.27% | 37.73% |
| All Indica | 798 | 39.35% | 60.65% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 71.66% | 28.34% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222844138 | T->C | INTERGENIC | None |