Detailed information of SNP:
|
SNP ID:
sf1222873547(Gbrowse)
Chromosome: chr12 Position: 22873547 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 93.73% | 6.27% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 40 | 92.50% | 7.50% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222873547 | T->C | INTERGENIC | None |