Detailed information of SNP:
|
SNP ID:
sf1222894101(Gbrowse)
Chromosome: chr12 Position: 22894101 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 96.53% | 3.47% |
| All Indica | 770 | 95.06% | 4.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 369 | 98.92% | 1.08% |
| Indica II | 198 | 86.87% | 13.13% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222894101 | T->C | LOC_Os12g37330(LOC_Os12g37330.1) | Non-Synonymous SNP |