Detailed information of SNP:
|
SNP ID:
sf1222903377(Gbrowse)
Chromosome: chr12 Position: 22903377 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.83% | 24.17% |
| All Indica | 795 | 58.24% | 41.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 211 | 56.87% | 43.13% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222903377 | T->A | INTERGENIC | None |