Detailed information of SNP:
|
SNP ID:
sf1222910517(Gbrowse)
Chromosome: chr12 Position: 22910517 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 63.35% | 36.65% |
| All Indica | 798 | 42.48% | 57.52% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 212 | 6.60% | 93.40% |
| Indica Intermediate | 211 | 17.06% | 82.94% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222910517 | T->C | INTERGENIC | None |