Detailed information of SNP:
|
SNP ID:
sf1223004664(Gbrowse)
Chromosome: chr12 Position: 23004664 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 93.81% | 6.19% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 456 | 82.24% | 17.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 76.92% | 23.08% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223004664 | C->G | LOC_Os12g37540(LOC_Os12g37540.1) | Non-Synonymous SNP |