Detailed information of SNP:
|
SNP ID:
sf1223004742(Gbrowse)
Chromosome: chr12 Position: 23004742 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 96.22% | 3.78% |
| All Indica | 766 | 94.65% | 5.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 83.33% | 16.67% |
| Indica I | 362 | 94.48% | 5.52% |
| Indica II | 203 | 94.09% | 5.91% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223004742 | A->G | LOC_Os12g37540(LOC_Os12g37540.1) | Synonymous |