Detailed information of SNP:
|
SNP ID:
sf1223107882(Gbrowse)
Chromosome: chr12 Position: 23107882 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 83.84% | 16.16% |
| All Indica | 799 | 77.72% | 22.28% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223107882 | C->A | INTERGENIC | None |