Detailed information of SNP:
|
SNP ID:
sf1223118980(Gbrowse)
Chromosome: chr12 Position: 23118980 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 74.48% | 25.52% |
| All Indica | 773 | 87.45% | 12.55% |
| All Japonica | 451 | 49.45% | 50.55% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 363 | 79.06% | 20.94% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 202 | 93.56% | 6.44% |
| Temperate Japonica | 295 | 35.25% | 64.75% |
| Tropical Japonica | 90 | 80.00% | 20.00% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223118980 | A->G | LOC_Os12g37710(LOC_Os12g37710.1) | INTRON |
| sf1223118980 | A->G | LOC_Os12g37710(LOC_Os12g37710.2) | INTRON |