Detailed information of SNP:
|
SNP ID:
sf1223283986(Gbrowse)
Chromosome: chr12 Position: 23283986 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1331 | 89.86% | 10.14% |
| All Indica | 712 | 90.31% | 9.69% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 136 | 96.32% | 3.68% |
| Indica Intermediate | 201 | 96.52% | 3.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223283986 | C->G | INTERGENIC | None |