Detailed information of SNP:
|
SNP ID:
sf1223304296(Gbrowse)
Chromosome: chr12 Position: 23304296 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.78% | 38.22% |
| All Indica | 799 | 41.18% | 58.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223304296 | G->A | INTERGENIC | None |