Detailed information of SNP:
|
SNP ID:
sf1223322426(Gbrowse)
Chromosome: chr12 Position: 23322426 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.61% | 6.39% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 84.57% | 15.43% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 92.07% | 7.93% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223322426 | C->T | LOC_Os12g38020(LOC_Os12g38020.1) | Synonymous |