Detailed information of SNP:
|
SNP ID:
sf1223383977(Gbrowse)
Chromosome: chr12 Position: 23383977 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 63.58% | 36.42% |
| All Indica | 742 | 35.58% | 64.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 368 | 15.76% | 84.24% |
| Indica II | 177 | 72.88% | 27.12% |
| Indica Intermediate | 197 | 39.09% | 60.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223383977 | C->A | INTERGENIC | None |