Detailed information of SNP:
|
SNP ID:
sf1223398297(Gbrowse)
Chromosome: chr12 Position: 23398297 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 98.27% | 1.73% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 470 | 96.81% | 3.19% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 99.69% | 0.31% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 60 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223398297 | G->A | INTERGENIC | None |