Detailed information of SNP:
|
SNP ID:
sf1223404412(Gbrowse)
Chromosome: chr12 Position: 23404412 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 53.01% | 46.99% |
| All Indica | 796 | 85.30% | 14.70% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 51.43% | 48.57% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223404412 | A->G | INTERGENIC | None |