Detailed information of SNP:
|
SNP ID:
sf1223405140(Gbrowse)
Chromosome: chr12 Position: 23405140 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.94% | 48.06% |
| All Indica | 799 | 23.90% | 76.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223405140 | G->T | INTERGENIC | None |