Detailed information of SNP:
|
SNP ID:
sf1223405976(Gbrowse)
Chromosome: chr12 Position: 23405976 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 53.19% | 46.81% |
| All Indica | 761 | 86.60% | 13.40% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 178 | 83.71% | 16.29% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223405976 | C->T | INTERGENIC | None |