Detailed information of SNP:
|
SNP ID:
sf1223420281(Gbrowse)
Chromosome: chr12 Position: 23420281 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 62.64% | 37.36% |
| All Indica | 789 | 88.72% | 11.28% |
| All Japonica | 436 | 14.22% | 85.78% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 204 | 67.65% | 32.35% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 291 | 17.18% | 82.82% |
| Tropical Japonica | 89 | 3.37% | 96.63% |
| Japonica Intermediate | 56 | 16.07% | 83.93% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223420281 | C->T | LOC_Os12g38190(LOC_Os12g38190.1) | Synonymous |