Detailed information of SNP:
|
SNP ID:
sf1223420325(Gbrowse)
Chromosome: chr12 Position: 23420325 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 50.56% | 49.44% |
| All Indica | 727 | 18.98% | 81.02% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 337 | 6.53% | 93.47% |
| Indica II | 189 | 50.26% | 49.74% |
| Indica Intermediate | 201 | 10.45% | 89.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223420325 | T->C | LOC_Os12g38190(LOC_Os12g38190.1) | Non-Synonymous SNP |