Detailed information of SNP:
|
SNP ID:
sf1223420454(Gbrowse)
Chromosome: chr12 Position: 23420454 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 96.67% | 3.33% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 31.67% | 68.33% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223420454 | G->A | LOC_Os12g38190(LOC_Os12g38190.1) | Non-Synonymous SNP |