Detailed information of SNP:
|
SNP ID:
sf1223420701(Gbrowse)
Chromosome: chr12 Position: 23420701 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 53.83% | 46.17% |
| All Indica | 791 | 86.09% | 13.91% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 207 | 63.29% | 36.71% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223420701 | T->C | INTERGENIC | None |