Detailed information of SNP:
|
SNP ID:
sf1223420939(Gbrowse)
Chromosome: chr12 Position: 23420939 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.74% | 45.26% |
| All Indica | 794 | 87.53% | 12.47% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 208 | 64.90% | 35.10% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223420939 | T->C | INTERGENIC | None |