Detailed information of SNP:
|
SNP ID:
sf1223469172(Gbrowse)
Chromosome: chr12 Position: 23469172 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.47% | 8.53% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223469172 | G->A | INTERGENIC | None |