Detailed information of SNP:
|
SNP ID:
sf1223471185(Gbrowse)
Chromosome: chr12 Position: 23471185 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.93% | 37.07% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 489 | 4.50% | 95.50% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 5.44% | 94.56% |
| Tropical Japonica | 90 | 3.33% | 96.67% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223471185 | T->C | LOC_Os12g38280(LOC_Os12g38280.1) | INTRON |