Detailed information of SNP:
|
SNP ID:
sf1223473737(Gbrowse)
Chromosome: chr12 Position: 23473737 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 96.31% | 3.69% |
| All Indica | 790 | 93.80% | 6.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223473737 | G->A | LOC_Os12g38280(LOC_Os12g38280.1) | Non-Synonymous SNP |