Detailed information of SNP:
|
SNP ID:
sf1223501046(Gbrowse)
Chromosome: chr12 Position: 23501046 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 82.07% | 17.93% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 497 | 56.14% | 43.86% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 65.67% | 34.33% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223501046 | T->C | INTERGENIC | None |