Detailed information of SNP:
|
SNP ID:
sf1223511100(Gbrowse)
Chromosome: chr12 Position: 23511100 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 67.22% | 32.78% |
| All Indica | 778 | 79.31% | 20.69% |
| All Japonica | 496 | 44.76% | 55.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 79.39% | 20.61% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 206 | 86.41% | 13.59% |
| Temperate Japonica | 334 | 35.93% | 64.07% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223511100 | A->G | INTERGENIC | None |