Detailed information of SNP:
|
SNP ID:
sf1223537017(Gbrowse)
Chromosome: chr12 Position: 23537017 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 64.33% | 35.67% |
| All Indica | 749 | 98.66% | 1.34% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 168 | 95.83% | 4.17% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223537017 | T->G | INTERGENIC | None |