Detailed information of SNP:



SNP ID: sf1223619830(Gbrowse)

Chromosome: chr12

Position: 23619830
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1413 55.56% 44.44%
All Indica796 87.44% 12.56%
All Japonica497 1.41% 98.59%
Aus67 91.04% 8.96%
Indica I372 93.82% 6.18%
Indica II213 70.89% 29.11%
Indica Intermediate211 92.89% 7.11%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 21.43% 78.57%
Intermediate39 46.15% 53.85%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1223619830 C->T INTERGENIC None