Detailed information of SNP:
|
SNP ID:
sf1223619830(Gbrowse)
Chromosome: chr12 Position: 23619830 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 55.56% | 44.44% |
| All Indica | 796 | 87.44% | 12.56% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223619830 | C->T | INTERGENIC | None |