Detailed information of SNP:
|
SNP ID:
sf1223645422(Gbrowse)
Chromosome: chr12 Position: 23645422 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 58.25% | 41.75% |
| All Indica | 767 | 97.91% | 2.09% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 11 | 45.45% | 54.55% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 188 | 94.15% | 5.85% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223645422 | T->C | INTERGENIC | None |