Detailed information of SNP:
|
SNP ID:
sf1223731907(Gbrowse)
Chromosome: chr12 Position: 23731907 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 69.70% | 30.30% |
| All Indica | 788 | 98.35% | 1.65% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223731907 | A->G | INTERGENIC | None |