Detailed information of SNP:
|
SNP ID:
sf1223732633(Gbrowse)
Chromosome: chr12 Position: 23732633 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 66.59% | 33.41% |
| All Indica | 703 | 53.77% | 46.23% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 61 | 9.84% | 90.16% |
| Indica I | 338 | 51.48% | 48.52% |
| Indica II | 166 | 35.54% | 64.46% |
| Indica Intermediate | 199 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223732633 | C->T | INTERGENIC | None |