Detailed information of SNP:
|
SNP ID:
sf1223736804(Gbrowse)
Chromosome: chr12 Position: 23736804 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 97.58% | 2.42% |
| All Indica | 790 | 98.61% | 1.39% |
| All Japonica | 491 | 95.72% | 4.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223736804 | A->T | INTERGENIC | None |