Detailed information of SNP:
|
SNP ID:
sf1223756510(Gbrowse)
Chromosome: chr12 Position: 23756510 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 68.92% | 31.08% |
| All Indica | 745 | 97.32% | 2.68% |
| All Japonica | 497 | 24.35% | 75.65% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 166 | 94.58% | 5.42% |
| Indica Intermediate | 205 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 20.30% | 79.70% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223756510 | G->A | INTERGENIC | None |