Detailed information of SNP:
|
SNP ID:
sf1223793742(Gbrowse)
Chromosome: chr12 Position: 23793742 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.14% | 32.86% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223793742 | T->G | LOC_Os12g38780(LOC_Os12g38780.2) | Non-Synonymous SNP |
| sf1223793742 | T->G | LOC_Os12g38780(LOC_Os12g38780.1) | Non-Synonymous SNP |