Detailed information of SNP:
|
SNP ID:
sf1223826016(Gbrowse)
Chromosome: chr12 Position: 23826016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.81% | 9.19% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 76.57% | 23.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 80.78% | 19.22% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223826016 | C->T | INTERGENIC | None |