Detailed information of SNP:
|
SNP ID:
sf1223832465(Gbrowse)
Chromosome: chr12 Position: 23832465 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 66.98% | 33.02% |
| All Indica | 774 | 92.64% | 7.36% |
| All Japonica | 487 | 24.02% | 75.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 94.25% | 5.75% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 203 | 90.15% | 9.85% |
| Temperate Japonica | 330 | 19.70% | 80.30% |
| Tropical Japonica | 91 | 29.67% | 70.33% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 36 | 55.56% | 44.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223832465 | T->C | LOC_Os12g38840(LOC_Os12g38840.1) | INTRON |