Detailed information of SNP:
|
SNP ID:
sf1223832491(Gbrowse)
Chromosome: chr12 Position: 23832491 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.90% | 29.10% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 496 | 24.80% | 75.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 20.66% | 79.34% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223832491 | A->C | LOC_Os12g38840(LOC_Os12g38840.1) | INTRON |
| sf1223832491 | A->C | LOC_Os12g38840(LOC_Os12g38840.1) | SNPs that disrupt splice sites |