Detailed information of SNP:
|
SNP ID:
sf1223835839(Gbrowse)
Chromosome: chr12 Position: 23835839 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 58.49% | 41.51% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 8 | 25.00% | 75.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223835839 | A->T | INTERGENIC | None |