Detailed information of SNP:
|
SNP ID:
sf1223839285(Gbrowse)
Chromosome: chr12 Position: 23839285 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.63% | 38.37% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223839285 | A->G | INTERGENIC | None |