Detailed information of SNP:
SNP ID:
sf1223839872(Gbrowse)
Chromosome: chr12 Position: 23839872 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1417 | 61.96% | 38.04% |
All Indica | 798 | 97.87% | 2.13% |
All Japonica | 497 | 1.01% | 98.99% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 212 | 93.40% | 6.60% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1223839872 | G->A | INTERGENIC | None |