Detailed information of SNP:
|
SNP ID:
sf1223843299(Gbrowse)
Chromosome: chr12 Position: 23843299 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 58.61% | 41.39% |
| All Indica | 774 | 93.15% | 6.85% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 366 | 95.63% | 4.37% |
| Indica II | 201 | 88.56% | 11.44% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223843299 | A->G | INTERGENIC | None |