Detailed information of SNP:



SNP ID: sf1223847465(Gbrowse)

Chromosome: chr12

Position: 23847465
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1418 98.17% 1.83%
All Indica799 100.00% 0.00%
All Japonica496 94.76% 5.24%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 92.81% 7.19%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1223847465 A->C LOC_Os12g38850(LOC_Os12g38850.2) INTRON
sf1223847465 A->C LOC_Os12g38850(LOC_Os12g38850.1) INTRON
sf1223847465 A->C LOC_Os12g38850(LOC_Os12g38850.3) INTRON