Detailed information of SNP:
|
SNP ID:
sf1223847465(Gbrowse)
Chromosome: chr12 Position: 23847465 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 98.17% | 1.83% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223847465 | A->C | LOC_Os12g38850(LOC_Os12g38850.2) | INTRON |
| sf1223847465 | A->C | LOC_Os12g38850(LOC_Os12g38850.1) | INTRON |
| sf1223847465 | A->C | LOC_Os12g38850(LOC_Os12g38850.3) | INTRON |