Detailed information of SNP:
|
SNP ID:
sf1223864673(Gbrowse)
Chromosome: chr12 Position: 23864673 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.19% | 35.81% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223864673 | A->C | LOC_Os12g38870(LOC_Os12g38870.1) | UTR_5_PRIME |
| sf1223864673 | A->C | LOC_Os12g38870(LOC_Os12g38870.2) | UTR_5_PRIME |