Detailed information of SNP:
|
SNP ID:
sf1223867427(Gbrowse)
Chromosome: chr12 Position: 23867427 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 84.65% | 15.35% |
| All Indica | 795 | 81.01% | 18.99% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 77.21% | 22.79% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223867427 | T->C | INTERGENIC | None |