Detailed information of SNP:
|
SNP ID:
sf1223867551(Gbrowse)
Chromosome: chr12 Position: 23867551 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.82% | 13.18% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223867551 | C->T | INTERGENIC | None |