Detailed information of SNP:
|
SNP ID:
sf1223868800(Gbrowse)
Chromosome: chr12 Position: 23868800 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 61.51% | 38.49% |
| All Indica | 793 | 97.35% | 2.65% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 11 | 81.82% | 18.18% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223868800 | T->C | INTERGENIC | None |