Detailed information of SNP:
SNP ID:
sf1223869372(Gbrowse)
Chromosome: chr12 Position: 23869372 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 53.91% | 46.09% |
All Indica | 799 | 29.16% | 70.84% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 1.49% | 98.51% |
Indica I | 375 | 9.07% | 90.93% |
Indica II | 213 | 37.09% | 62.91% |
Indica Intermediate | 211 | 56.87% | 43.13% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1223869372 | A->G | INTERGENIC | None |