Detailed information of SNP:
|
SNP ID:
sf1223869372(Gbrowse)
Chromosome: chr12 Position: 23869372 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.91% | 46.09% |
| All Indica | 799 | 29.16% | 70.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 9.07% | 90.93% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223869372 | A->G | INTERGENIC | None |