Detailed information of SNP:
|
SNP ID:
sf1223876869(Gbrowse)
Chromosome: chr12 Position: 23876869 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1338 | 62.03% | 37.97% |
| All Indica | 721 | 97.78% | 2.22% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 305 | 99.34% | 0.66% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 204 | 99.02% | 0.98% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223876869 | C->T | INTERGENIC | None |