Detailed information of SNP:
|
SNP ID:
sf1223881449(Gbrowse)
Chromosome: chr12 Position: 23881449 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 60.33% | 39.67% |
| All Indica | 750 | 95.87% | 4.13% |
| All Japonica | 479 | 1.67% | 98.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 171 | 87.72% | 12.28% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 318 | 1.26% | 98.74% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1223881449 | A->G | LOC_Os12g38890(LOC_Os12g38890.1) | Non-Synonymous SNP |